PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.06G172900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 299aa    MW: 34038.2 Da    PI: 8.6523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.06G172900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.56.7e-50211492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeelv +yL++kv++k+l++ e ik+vdiyk++PwdLpk  + +eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+
  Manes.06G172900.1.p  21 LPGFRFHPTDEELVGFYLRRKVDKKPLSI-ELIKQVDIYKYDPWDLPKPSSVGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKP 109
                          69***************************.89***************87778999*********************************** PP

                  NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s+   ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Manes.06G172900.1.p 110 VYSHggeGRDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 149
                          ***96544555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5519180IPR003441NAC domain
PROSITE profilePS5100552.95920180IPR003441NAC domain
PfamPF023652.9E-2522149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNTNNTNTPP ALDDDEEEVT LPGFRFHPTD EELVGFYLRR KVDKKPLSIE LIKQVDIYKY  60
DPWDLPKPSS VGEKEGYFFC KRGRKYRNSI RPNRVTGSGF WKATGIDKPV YSHGGEGRDC  120
IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP TNDSNTTDLV NAKISAQEAE VWTLCRIFKR  180
NVSHRKYTPD WREISNKRQP AAIDKSSKTC SVDSNSRETY LSFGAPHVEC SDKKPVFNHV  240
NEWKQFHADQ LSSITTQPSS SMASPTNISS PYRNEVLGYS DWDELRSVVE FAFGPSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-492218619171NO APICAL MERISTEM PROTEIN
1ut4_B6e-492218619171NO APICAL MERISTEM PROTEIN
1ut7_A6e-492218619171NO APICAL MERISTEM PROTEIN
1ut7_B6e-492218619171NO APICAL MERISTEM PROTEIN
4dul_A6e-492218619171NAC domain-containing protein 19
4dul_B6e-492218619171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.06G172900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052310.0KR605231.1 Manihot esculenta NAC transcription factors 93 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615211.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2C9VRP80.0A0A2C9VRP8_MANES; Uncharacterized protein
STRINGcassava4.1_024488m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.15e-96NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]