PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G003800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 422aa    MW: 46807.7 Da    PI: 7.5795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G003800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11349394655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l P+     +k  + a++L +AveYIk+Lq
  Manes.07G003800.1.p 349 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTADMLDLAVEYIKDLQ 394
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.462343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15346405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-11347398No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14348405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-11349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSLLYSPSFN YQNGELRRNQ EYMDLNQHHY HQEQHQQNSG LMRYRSAPSS FLQSLVNGTS  60
SHGGDGGGVE GEDYRYFRSS SPEMDTMLAR FMSTCNGSGD SNPQNLQEYG ERPAMKQEIE  120
DSQMVYQSLP INDLTDDGNP VNVGNSVDNT YGVMNSMALE NSMQASKMST LNGSNLVRQN  180
SSPAVFFSNL GVDNGFTVTK DGGSFRACNG LNAEASPSIS RLSNHLNFPS GQRFLPRIAE  240
IGEENPGASS PEGNTGKRQY MNFGNDSWDD SSSNDFKRLR SNDGHVFSGL NMLDNQNGNS  300
GNRSTGLTHH LSLPKTASEM ATIEKFLQFQ GSVPCKIRAK RGCATHPRSI AERVRRTRIS  360
ERMRKLQDLF PNMDKQTNTA DMLDLAVEYI KDLQKQVKNL KDTRAKCTCS SKQKLYLNAS  420
A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G003800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618193.10.0transcription factor bHLH130-like
TrEMBLA0A2C9VHB50.0A0A2C9VHB5_MANES; Uncharacterized protein
STRINGcassava4.1_008380m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-70bHLH family protein