PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G012700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 431aa    MW: 47502.8 Da    PI: 6.8694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30207266159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Manes.07G012700.1.p 207 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAsGCPVRKQVQRCLEDMSILITTYEGTHNHP 266
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-32192268IPR003657WRKY domain
SuperFamilySSF1182901.7E-27200268IPR003657WRKY domain
PROSITE profilePS5081129.092202268IPR003657WRKY domain
SMARTSM007741.9E-36207267IPR003657WRKY domain
PfamPF031064.6E-27208266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDINLSLKID TEEEEVEENG EEEKMDLQET NDNEATATGE EVADDSSVEL SLQDNSNTEE  60
LSALQMQMNR MKEENKVLRR VVEQTMKDYY DLQMKFAVIQ QNTHNNDKKA LQEPKGSVPE  120
FLDANPGGKD LGLSLRLQTD HHQEREEGYK EEINKKENGN DASLPNHNKL QRTDHHLAGI  180
SSHAAAASLH NRKARVSVRA RCQTATMNDG CQWRKYGQKI AKGNPCPRAY YRCTVASGCP  240
VRKQVQRCLE DMSILITTYE GTHNHPLPVG ATAMASTASA AASFMLMNSS NYSLANGVHN  300
FTQSSSLPYS RATSHHIFYP YSSPFRSINP NDPSKGIVLD LTHGTSSSSS ASASHPFGHP  360
LSSWMQNKPS SHQTNRRGEK KDKSVAENVT TSIASDPKFR VAVAAAITSL INKEKGTPLS  420
MGLPIRNSSP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21194270176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276420.0KT827642.1 Manihot esculenta WRKY transcription factor 67 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617233.10.0probable WRKY transcription factor 9
TrEMBLA0A140H8S10.0A0A140H8S1_MANES; WRKY transcription factor 67
STRINGcassava4.1_032189m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-70WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]