PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G020500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 133aa    MW: 15207.7 Da    PI: 10.0518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G020500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-1118119499
                          E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 
                          +l+++  l++ +l++p + ++++      g   + sk ++  d++g++We+ l  r+++      v  + W  Fv + gL++gD+v+F+ 
  Manes.07G020500.1.p  18 KLLKKTDLEH-QLIVPSEVLKKYpildqnG---HVSKFIISFDKNGKRWEFPLATRNTGIYekpSVPPASWHPFVAEYGLRAGDSVLFYT 103
                          4445555555.5999*********996433...34556777899*********544433224445555*********************8 PP

                          -SS.SEE..EEEEE-S CS
                   B3  85 dgr.sefelvvkvfrk 99 
                           ++    +  v+ +rk
  Manes.07G020500.1.p 104 RRDdPANKIQVRGLRK 119
                          7766777777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-1014106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.76914118IPR003340B3 DNA binding domain
CDDcd100174.76E-815118No hitNo description
Gene3DG3DSA:2.40.330.109.6E-1215109IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.004616120IPR003340B3 DNA binding domain
PfamPF023621.7E-720110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MKDIIPINDP KTVVLFSKLL KKTDLEHQLI VPSEVLKKYP ILDQNGHVSK FIISFDKNGK  60
RWEFPLATRN TGIYEKPSVP PASWHPFVAE YGLRAGDSVL FYTRRDDPAN KIQVRGLRKT  120
ILFKGEESWV EV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G020500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664346.11e-50uncharacterized protein LOC110653034
TrEMBLA0A2C9VHR26e-92A0A2C9VHR2_MANES; Uncharacterized protein
STRINGcassava4.1_030218m2e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.19e-07B3 family protein