PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G020700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 133aa    MW: 15109.4 Da    PI: 9.5534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G020700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-1017115395
                          EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                          ++l+++  l+++ l++p + ++++      g   + sk ++  d++g++We+ l  r+++ +   +v  + W  Fv + gL++gD+v+F+
  Manes.07G020700.1.p  17 SKLLTKTDLELQ-LIVPSDVLQRYpildqnG---HVSKFIISFDKNGKRWEFPLATRNTGPHpkpTVPPASWHPFVAEYGLRAGDSVLFY 102
                          556677777776.999999999999996433...34556677899*********876666557779999********************* PP

                          E-SS.SEE..EEE CS
                   B3  84 ldgr.sefelvvk 95 
                            ++    +  v+
  Manes.07G020700.1.p 103 TRRDdLPDKIQVR 115
                          6654444545554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-1013106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-1114108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-715102No hitNo description
SMARTSM010190.00616120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MQGIIPINDP NTVVLFSKLL TKTDLELQLI VPSDVLQRYP ILDQNGHVSK FIISFDKNGK  60
RWEFPLATRN TGPHPKPTVP PASWHPFVAE YGLRAGDSVL FYTRRDDLPD KIQVRGLRKT  120
ILFRGEESWV EV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G020700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664346.16e-48uncharacterized protein LOC110653034
TrEMBLA0A2C9VHS46e-92A0A2C9VHS4_MANES; Uncharacterized protein
STRINGcassava4.1_030218m6e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-08B3 family protein