PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G021000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 147aa    MW: 16761.4 Da    PI: 9.6432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G021000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.2e-1117118398
                          EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                          ++l+++  l+++ l++p + ++++    + + + sk ++  d++g+ We+ l  r++++     v  + W  Fv + gL++gD+v+F+  
  Manes.07G021000.1.p  17 SKLLTKTDLEHQ-LIVPSEVLTKYpildQ-NGHVSKYIISFDKNGKPWEFPLATRNTGRYpkpSVPPASWHPFVAEYGLRAGDSVLFYTR 104
                          455566666665.999*********9962.444567888899**********765555557778888*********************55 PP

                          .SSSEE..EEEEE- CS
                   B3  86 .grsefelvvkvfr 98 
                           ++   +  v+ +r
  Manes.07G021000.1.p 105 lDDPADKIQVRGLR 118
                          24466666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1014103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.51514120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1114104IPR015300DNA-binding pseudobarrel domain
CDDcd100174.86E-815118No hitNo description
SMARTSM010190.005216120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MKDIIPINDP KTVVLFSKLL TKTDLEHQLI VPSEVLTKYP ILDQNGHVSK YIISFDKNGK  60
PWEFPLATRN TGRYPKPSVP PASWHPFVAE YGLRAGDSVL FYTRLDDPAD KIQVRGLRKT  120
ILFKGEESWV EVEKLHNQRR ACMNLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G021000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664346.13e-54uncharacterized protein LOC110653034
TrEMBLA0A2C9VJC51e-104A0A2C9VJC5_MANES; Uncharacterized protein
STRINGcassava4.1_030218m1e-86(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-08B3 family protein