PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G036500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24765.3 Da    PI: 9.8522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.71e-201662349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         i+ +sn  vtfskRr g++KKA+ELS+LC+ae+ +i+fs+t k++ +
  Manes.07G036500.1.p 16 ISKESNLLVTFSKRRYGVFKKASELSILCGAEITIIVFSPTMKVFSF 62
                         8999*************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-27665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.577666IPR002100Transcription factor, MADS-box
CDDcd002652.88E-31775No hitNo description
SuperFamilySSF554551.03E-23776IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-17828IPR002100Transcription factor, MADS-box
PfamPF003191.8E-211562IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRQSKGRRK LEIVKISKES NLLVTFSKRR YGVFKKASEL SILCGAEITI IVFSPTMKVF  60
SFGHPSVETV IDRFLYGNST QTSGVLQLVQ THRNARVRDL NLQLTQVTTQ LNEEKKRGEK  120
LDQGRKAGDG QHWWESPIEE LDLPKLEQLK TSLEILRENV AKRVEELLIQ TTNHTQFYNN  180
PNLAPVHEAL PFDPNNKVID PNMIYDLGFP NRNGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-15774269MEF2C
5f28_B8e-15774269MEF2C
5f28_C8e-15774269MEF2C
5f28_D8e-15774269MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618803.11e-160agamous-like MADS-box protein AGL62
SwissprotQ9FKK24e-50AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VJU31e-158A0A2C9VJU3_MANES; Uncharacterized protein
STRINGcassava4.1_021928m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-47AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]