PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G038600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26103.8 Da    PI: 7.511
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G038600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.8e-271868151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n++ rqvtfskRr g++KKA+ELS+LCd+e+a+++fs tgkl+ey+s
  Manes.07G038600.1.p 18 KKIDNNTARQVTFSKRRRGLFKKAYELSTLCDVEIALMVFSATGKLFEYAS 68
                         68***********************************************86 PP
2K-box52.32.4e-18951801499
                K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           +  + ++a L keie+  r++R++ Ge+L+ L+++eLqqLe+ Le+slk++ ++K e+l ++i+ l+    +l+een++L+k+++
  Manes.07G038600.1.p  95 LQLKNGNIAALSKEIEERIRQLRQMRGEELHGLNIEELQQLENLLERSLKRVSETKGEILANEINALKSEGAQLKEENERLKKQMM 180
                          5555667899999999999999*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-391069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.5761070IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-301182IPR002100Transcription factor, MADS-box
CDDcd002653.55E-391277No hitNo description
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-271232IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251966IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-273247IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-274768IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.51495185IPR002487Transcription factor, K-box
PfamPF014861.2E-15100179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSFDCLSLEM TRQKIQIKKI DNNTARQVTF SKRRRGLFKK AYELSTLCDV EIALMVFSAT  60
GKLFEYASSS MNQVIERRNL HPKNVGKLDQ TSLELQLKNG NIAALSKEIE ERIRQLRQMR  120
GEELHGLNIE ELQQLENLLE RSLKRVSETK GEILANEINA LKSEGAQLKE ENERLKKQMM  180
KERGGTMHLF EAGGQSSDSM ITNTSSSVDP AQDFEDSYTL LRLGLPFSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-211075166MEF2C
5f28_B2e-211075166MEF2C
5f28_C2e-211075166MEF2C
5f28_D2e-211075166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G038600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4865658e-74AY486565.1 Hevea brasiliensis clone mHbCIRa268 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617396.11e-166MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY66e-79JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2C9VIA01e-165A0A2C9VIA0_MANES; Uncharacterized protein
STRINGcassava4.1_015454m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.19e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]