PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G043000.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 295aa    MW: 32204.2 Da    PI: 8.5003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G043000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013261280221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C++C+ s+s+  n+k+H++
  Manes.07G043000.3.p 261 RCTICNISCSSEGNMKSHLM 280
                          8*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-983126No hitNo description
SMARTSM004510.04687121IPR003604Zinc finger, U1-type
PfamPF128747.2E-990114No hitNo description
SMARTSM003551.590114IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-7150196No hitNo description
SMARTSM004510.051157191IPR003604Zinc finger, U1-type
PfamPF128748.6E-5160184No hitNo description
SMARTSM003553.1160184IPR015880Zinc finger, C2H2-like
SMARTSM004510.077216250IPR003604Zinc finger, U1-type
SuperFamilySSF576672.06E-6218252No hitNo description
PfamPF128745.9E-5219243No hitNo description
SMARTSM0035510219243IPR015880Zinc finger, C2H2-like
SMARTSM004510.097257291IPR003604Zinc finger, U1-type
SuperFamilySSF576671.88E-7257287No hitNo description
SMARTSM003550.015260284IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-7261284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTENQKLALT KQPEFEVSKV VQKDISSMEI TKSQESALTK QLQFGQLEPD FSQSGNRTTA  60
PLDFTGTTPT WFAASGLPDV LPSNNIQKEW TCAVCQVTTT SEADLISHLH GRRHESACEK  120
LKAYNQTSKS KVSSASAMEN ANAAESRGNS PDTKQTHKPW TCATCHVTTT NKADLVSHFQ  180
GLRHKDALEK LKAKFQTSED KTHSALAAIA GRDVPNIPWT CAVCQLKITN LASLVSHLEG  240
RRHEDACKSY QAKINSIKSL RCTICNISCS SEGNMKSHLM GSKHLTNTGA QQQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G043000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618205.11e-155uncharacterized protein LOC110619219 isoform X1
RefseqXP_021618206.11e-155uncharacterized protein LOC110619219 isoform X1
RefseqXP_021618207.11e-155uncharacterized protein LOC110619219 isoform X2
RefseqXP_021618209.11e-156zinc finger protein 346-like isoform X4
RefseqXP_021618211.11e-156zinc finger protein 346-like isoform X4
TrEMBLA0A251KH330.0A0A251KH33_MANES; Uncharacterized protein
TrEMBLA0A2C9VID20.0A0A2C9VID2_MANES; Uncharacterized protein
STRINGcassava4.1_012985m0.0(Manihot esculenta)