PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G058400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 221aa MW: 23974.3 Da PI: 7.5762

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G058400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.9	3.8e-29	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C++dC+l++++ p++q++++ +v+k+FG++ ++++++++p ++r+ +++sl++eA r+ +Pv+Gavg+++++++ Manes.07G058400.1.p 2 SCNGCRILRKGCSDDCMLRQCLqgiddPQAQANATVFVAKFFGRAGLISFISSVPVHQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNW 91 6*************************************************************************************** PP DUF260 86 qleqlkaela 95 +++q+++ ++ Manes.07G058400.1.p 92 HVCQTAVMTV 101 **987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.399	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-25	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSCNGCRILR KGCSDDCMLR QCLQGIDDPQ AQANATVFVA KFFGRAGLIS FISSVPVHQR 60 PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQTAVMT VLRGGAIEPM LDFDGRMLGQ 120 NLDNFSECSK FKPRNVSSGS KTTRTTTLKM KRSGDDDDES KCELTNLDLC LMYPTEKKLR 180 ATTPSEEESE TTTLVSGGST SAGTNCSLQG GERKLWPLFI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G058400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617841.1	1e-163	LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-57	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2C9VIV7	1e-161	A0A2C9VIV7_MANES; Uncharacterized protein
STRING	cassava4.1_029484m	1e-162	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-58	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Manes.07G058400.1.p