PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G066300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-PHD
Protein Properties Length: 1001aa    MW: 110343 Da    PI: 5.2153
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G066300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.71.7e-128378791052
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                            +++L + F++n+yp+++++  LAk+lg+t rqV  WF N R
  Manes.07G066300.1.p 837 AVTQRLYKSFKENQYPDRATKDNLAKELGVTFRQVNKWFENAR 879
                          67899************************************99 PP
2PHD39.11.7e-13474529151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ Cg+   +++++++lCdg C++ fH++Cl+++l ++e+p +   wlC+ C++k
  Manes.07G066300.1.p 474 FCAKCGSkdFTADNDIILCDGaCDRGFHQYCLTPPLLKDEIPPDdeGWLCPGCDCK 529
                          6999**976667********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.07E-13464533IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.5E-13470529IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.128472529IPR019787Zinc finger, PHD-finger
PfamPF006286.8E-11474529IPR019787Zinc finger, PHD-finger
CDDcd155042.88E-26474526No hitNo description
SMARTSM002491.1E-9474527IPR001965Zinc finger, PHD-type
PROSITE patternPS013590475526IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.5E-13824879IPR009057Homeodomain-like
SMARTSM003893.8E-12827889IPR001356Homeobox domain
CDDcd000861.55E-12832879No hitNo description
SuperFamilySSF466894.71E-12832884IPR009057Homeodomain-like
PfamPF000465.9E-10836879IPR001356Homeobox domain
PROSITE profilePS5007112.503842885IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
MFKAEHMGVS PAQVTFDAKS YSFHNQSTPV ETPEYGAEHK HIEILEQKHQ IMSETVQTEP  60
GDTNTVVSQS GASEALHQSS EDASEALHQS SEDATKSSLS ENLEWPSEGT RKSMLTDKSL  120
GPRPITIDQK LEFDSEDTCN GPSKEQYSLR SGITENHNAL PAFTVNETAD AAKNSLTEDL  180
EFPHEDARNS SQIDKSLCPQ QSIPEEILEF SSDGAHCEPL IERQKAGCDI VKGELLEIST  240
PLSSCTAANH LEPPPALVAK SYPIICLGLP HFKKNNVPAT KKLLMLHDDM DTRSKLKQSK  300
TPSKDMVSNS SRMGRKVKIT AKSSKRKYVL QSLVRSDRVL RSRSHEKPKA PDSSINLPKV  360
SSKKEKTKQK KKKGQGMRIE VDEYSRIRKH LRYLLNCMSY EQSLITAYSA EGWKGLSLEK  420
LKPEKELQRA TSEIFRRKLK IRDLFQRIDS LCAEGKLPES LFDSEGQISS EDIFCAKCGS  480
KDFTADNDII LCDGACDRGF HQYCLTPPLL KDEIPPDDEG WLCPGCDCKV DCIELLNDCQ  540
GTNISISDSW EKVFPEAAAA GQNSDQNIGL PSDDSDDNDY DPDEPEIDKK SEGDESSSDE  600
SDFTSASDEL EASPGDKQNL GIPFDDSEDG DDDYDPDGPD IDENVKEESS SSDFTSDSED  660
LAAYLDDKEL SREVESPGSS GPQGGVVREG SKHGGKKMQS LHGELLSILE LNPRQDGGTP  720
VSEKRNVERL NYKKLYDETY GNVSSDSSDD EDFTDTVGPR KRRKSTEVAP ASVNGDAFVI  780
KNGKQDRKET EYAPKKSQQS NIQNTSISPA KSQEGSSPSS LCGKTVKPSA YRRLGEAVTQ  840
RLYKSFKENQ YPDRATKDNL AKELGVTFRQ VNKWFENARW SFNHSSSMDA LVRKASGKDS  900
PLPKTNPKLP EGRQSAGKDA TLDGAHSEKT PKISNATPKS NIGDARDAKL GSEKGSKQNS  960
RKRKSGTDST AEAAKKLPAN LPKDQETRAG GRMTRSRSLR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1959964SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G066300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617517.10.0homeobox protein HAT3.1-like
RefseqXP_021617518.10.0homeobox protein HAT3.1-like
TrEMBLA0A2C9VJ450.0A0A2C9VJ45_MANES; Uncharacterized protein
STRINGcassava4.1_034445m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-90Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain