PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G092200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 497aa    MW: 54005.3 Da    PI: 7.9772
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21e-18108201187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkryk....kikegekkrtsessstcpyfd 83 
                          +W+++ + +L+ea++e+ ++l+rg+l++ +Weev+++++erg    ++s +qCk+k++nl+kryk    +i++++++  s+ ss++ +f+
  Manes.07G092200.1.p 108 EWSDSAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGsnnKKSVEQCKNKIDNLKKRYKvelqRINNSSGGYGSGGSSSWHWFK 197
                          5*************************************8887645578****************94333444444444699999****** PP

             trihelix  84 qlea 87 
                          q+ea
  Manes.07G092200.1.p 198 QIEA 201
                          *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-21106202No hitNo description
SMARTSM005950.0021116207IPR006578MADF domain
Gene3DG3DSA:3.40.1160.109.5E-72246489IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.27E-57256489IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.072256490IPR015963Uridylate kinase, bacteria
CDDcd042541.79E-115259490No hitNo description
PfamPF006969.1E-24260469IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MATDDFPLID PHAPPPHAPT RHPDSESVNG GDYFAAYADS DHDKSGSGAP ATPSSNRSHQ  60
IQNQHHHYYY NNSNSKRHKT SGSNVESESN TNNNATEYRT DYRKDREEWS DSAISCLLEA  120
YTEKYNQLNR GNLRGRDWEE VAEAVSERGG SNNKKSVEQC KNKIDNLKKR YKVELQRINN  180
SSGGYGSGGS SSWHWFKQIE AIMSNPTNAK ASAGAESECD AGSGGNGSLM ARPLKRYTPN  240
SVAVANNMKA KSVPNLKWRR VVFKISGSAL AGNCQNIDPK VAMQIAREVA TACRLGLEVA  300
IVVGGRNFFC GDSWISATGL ERSTAYQIGM MATVMNSILL QSALEKLGIQ SRVQSAFTMP  360
ELVEPYNRQR AIRHLEKGRV VIFGGVGAGA GNPLFSTDTA AALRASEINA DALLKGTNVA  420
GIYDCHSANT SMIVDHMSFR EVVSRGVTFM DMMAMTYCEE NGIPVVVFNL LEPGNISRAL  480
CGNQVGTLID QTGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-6322748918279Uridylate kinase
3nwy_B2e-6322748918279Uridylate kinase
3nwy_C2e-6322748918279Uridylate kinase
3nwy_D2e-6322748918279Uridylate kinase
3nwy_E2e-6322748918279Uridylate kinase
3nwy_F2e-6322748918279Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G092200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618881.10.0uncharacterized protein LOC110619658
TrEMBLA0A2C9VJV00.0A0A2C9VJV0_MANES; Uncharacterized protein
STRINGcassava4.1_006212m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-158Trihelix family protein