PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G099400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 681aa    MW: 75144.7 Da    PI: 6.6372
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G099400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3789.8e-25122223199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t+ ++d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Manes.07G099400.1.p 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILVKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL 209
                          89****************************986545444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Manes.07G099400.1.p 210 --RAENGDLCVGIRRA 223
                          ..4488999****997 PP
2Auxin_resp114.78.2e-38275358183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a++ ++FevvY+Prast+eF vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp S+Wr+L+
  Manes.07G099400.1.p 275 AATLAANWQPFEVVYYPRASTPEFFVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPSSPWRLLQ 358
                          688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-37115225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-30117226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-22121222No hitNo description
PfamPF023627.8E-23122223IPR003340B3 DNA binding domain
SMARTSM010191.9E-23122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775122224IPR003340B3 DNA binding domain
PfamPF065072.7E-32275358IPR010525Auxin response factor
PROSITE profilePS5174520.99594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MIRDFGVMKS QRVAEKCLDS QLWHVCAGGM VQMPPVNSKV FYFPQGHAEH AQGNVDFSHC  60
KVPAMIPCKV SAIKYLADPE TDEVFAKIRL NPLSERDVFC LEDSSDGGLF DGTASPEKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TILVKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG NEYPSGWNAF  240
GGYSGFLRED ENKLMRRNGD GDMKGKVKAE SVIQAATLAA NWQPFEVVYY PRASTPEFFV  300
KASAVRAAMQ IQWCPGMRFK MAFETEDSSR ISWFMGTISS VQVADPIRWP SSPWRLLQVS  360
WDEPDLLQNV KRVSPWLVEL VSNMPAIHLS PFSPPRKKLR LPQPHDFSLI SQFPVPSFTG  420
NPLSSNSPLC CVSDNIPAGI QGARHAQFEL SSADLHFNKL QSGLFPVGFH KLNHAAPTSR  480
IPSHNFMGIT ESNESLSCLL TMGNPTLSSK ENSETKEPHI LLFGQLIFTE QQGSQRFSGD  540
TNGNSSSDGN PEKTTNFSDG SVSVFHQTGL QENSSDEGSP RYGDHWKTSL GLETGHCKVF  600
LESEDVGRTL DLSVVGSYEE LYGKLENMFG IENSDMPGCV LYRDAAGAIK HTGDEPFSEF  660
LKTARRLTIL SDSGSDNIGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-85137933388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G099400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617207.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2C9VK330.0A0A2C9VK33_MANES; Auxin response factor
STRINGcassava4.1_002960m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]