PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G111400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 207aa    MW: 22990.1 Da    PI: 8.294
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G111400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.3e-141455445
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         e+k +  v+f+kRr+g++ KA EL +LCda+ av + s++++
  Manes.07G111400.1.p 14 EDKKQLLVSFTKRRQGLFNKAAELFTLCDAQLAVFVSSPSNN 55
                         6777778*******************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-16366IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.012354IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-18688IPR002100Transcription factor, MADS-box
CDDcd002667.15E-19682No hitNo description
PfamPF003192.6E-141463IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAAKSRKIPM VKREDKKQLL VSFTKRRQGL FNKAAELFTL CDAQLAVFVS SPSNNSKRKV  60
YSFGHPSVDQ VLDAFLENRL PNLVSYEYGA NKQYALSLSN EIKAMEAELN GKNKKVENLD  120
LEFFENSKSV EELEALVDAL QELTKKAKSR FCNNNSSVSP DVASNENSLL DDSPPTSTAL  180
TTSGYWLCPP STRPCFAKDI SPTTYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G111400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617591.11e-143agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VKI61e-149A0A2C9VKI6_MANES; Uncharacterized protein
STRINGcassava4.1_034008m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-20AGAMOUS-like 62