PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G111900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 192aa    MW: 20863.6 Da    PI: 9.198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G111900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Manes.07G111900.1.p 49 FECKTCNRQFPSFQALGGHRASH 71
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.95E-947124No hitNo description
PfamPF139123.2E-134873IPR007087Zinc finger, C2H2
SMARTSM003550.164971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139126.2E-10101126IPR007087Zinc finger, C2H2
PROSITE profilePS501578.912102124IPR007087Zinc finger, C2H2
SMARTSM003550.5102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKRSFHEAEL DSITMANCLM LLSQRKETAF PSFQAIKNTG VINSPSRVFE CKTCNRQFPS  60
FQALGGHRAS HKKPRLNGGG NRDGSSDTQS SSSSSPAKTK THECSICGLE FAIGQALGGH  120
MRRHRSAALN DQSNLRGPDT LSLDPTTSHI VKKSSSGRAL CLDLNLTPYE NDLELFRHGT  180
KAPPMVIDCF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G111900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618773.11e-140zinc finger protein ZAT12-like
TrEMBLA0A2C9VKE51e-139A0A2C9VKE5_MANES; Uncharacterized protein
STRINGcassava4.1_032984m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-35C2H2 family protein