PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G115200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 473aa    MW: 54232 Da    PI: 9.4215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1623111398
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          k+    d+ +s+ l +p+kf++++g++   s  + l+ +sg +We++l   k++++++lt+GW+eFv+   L  g f++F+++++  f  
  Manes.07G115200.1.p  23 KII-LDDTIRSRKLGIPRKFVRRYGSE--LSSPVFLKMPSGAKWEIQL--LKCDDEIWLTNGWQEFVEYYSLAFGYFLIFEFEQNCHF-- 105
                          444.367788889***********966..6667***************..*******************************9998888.. PP

                          EEEEE- CS
                   B3  93 vvkvfr 98 
                          +v + +
  Manes.07G115200.1.p 106 NVIIMD 111
                          666665 PP
2B364.91.2e-202373231399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ l++p +fa+e+ +k++e    tl +++g++W+v+++y  ++++++  l+ GW++F ++n L++gD++vF+l++rs  +++v +fr+
  Manes.07G115200.1.p 237 LNKLSIPASFAREYFIKNRE--IATLITKDGKTWSVEFCYtvSNRKQSASLGLGWNKFSQENYLEVGDVCVFELINRSAIRFNVVIFRH 323
                          45689*********877544..79999***********9999999999***************************999999*****997 PP
3B350.83e-16377470199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv + s++l++++l++p + +++     ++     + + ++++W vkl   k++   ++++GW++F+ +n Lk+gD+++F+l+ ++  
  Manes.07G115200.1.p 377 FFKVIIGSYHLEQSLLYVPLNIVAKSTTRRRN---NAMLQVENKRWPVKL--FKYPPNSMIAEGWRSFATENFLKVGDVCIFELIANEAV 461
                          99*********************888544444...44455577*******..89988999*************************99999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                           l+v++fr+
  Manes.07G115200.1.p 462 LLKVTIFRN 470
                          9*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2414113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-2414113IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-1719109No hitNo description
PROSITE profilePS5086313.49320113IPR003340B3 DNA binding domain
SMARTSM010191.4E-1521113IPR003340B3 DNA binding domain
PfamPF023625.6E-1423110IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-24221322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-23221322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.043225324IPR003340B3 DNA binding domain
CDDcd100172.63E-20226322No hitNo description
SMARTSM010193.5E-18228324IPR003340B3 DNA binding domain
PfamPF023623.1E-18237323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-17370469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-16371469IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-14377470IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211377471IPR003340B3 DNA binding domain
CDDcd100171.60E-14377469No hitNo description
SMARTSM010193.6E-10377471IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDSCLKKDDG RLVFKSTKPH FFKIILDDTI RSRKLGIPRK FVRRYGSELS SPVFLKMPSG  60
AKWEIQLLKC DDEIWLTNGW QEFVEYYSLA FGYFLIFEFE QNCHFNVIIM DKSASEIDYP  120
FSIINGNNKE PDLKEELPEQ KIEETENVNP LQSRKTKENS PLPFTQPHKK MKLENPTENT  180
KSHHPTRQSE AKRGKAKDTV RTQPLTAEEK ATALHRATAN FNSGNPYFMI ALQPSYLNKL  240
SIPASFAREY FIKNREIATL ITKDGKTWSV EFCYTVSNRK QSASLGLGWN KFSQENYLEV  300
GDVCVFELIN RSAIRFNVVI FRHIKDTNSS PSLDAGNNKQ LNHEESSICK PFNPGHSCSK  360
AFEAVEAAKK FSSANPFFKV IIGSYHLEQS LLYVPLNIVA KSTTRRRNNA MLQVENKRWP  420
VKLFKYPPNS MIAEGWRSFA TENFLKVGDV CIFELIANEA VLLKVTIFRN VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1519946921141B3 domain-containing transcription factor VRN1
4i1k_B1e-1519946921141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G115200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618013.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2C9VKK00.0A0A2C9VKK0_MANES; Uncharacterized protein
STRINGcassava4.1_028222m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-42B3 family protein