PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G131800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 188aa MW: 20264.5 Da PI: 5.7812

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G131800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.5e-15	3	37	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v+a++++G++ W+tIar ++ gRt++ +k++w++ Manes.07G131800.1.p 3 TIVQAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 37 68********.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.469	1	42	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-16	1	39	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.58E-11	1	42	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-6	1	40	IPR001005	SANT/Myb domain
CDD	cd00167	9.52E-10	1	38	No hit	No description
Pfam	PF00249	8.0E-12	2	37	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
DATIVQAHAL HGNKWATIAR LLPGRTDNAI KNHWNSTLRR KRAADLSSAS SESNSVMKRP 60 YVDVSVESGS GSDSGVKNKR QSLGASPEYS SFDGDARIMG PETSLTLSPP GDGFVSVATV 120 GEKVEEVEVN GGEECGERRR ENKCGVQIEE TCLLTIMQRM IAAEVRSYID RLRAEDGLDG 180 PSTRKDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mbj_A	1e-15	1	41	11	51	MYB PROTO-ONCOGENE PROTEIN
1mbk_A	1e-15	1	41	11	51	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G131800.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618027.1	1e-136	transcription factor MYB44-like
TrEMBL	A0A2C9VL20	1e-135	A0A2C9VL20_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_022961m	1e-133	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	2e-18	myb domain protein 1

Link Out ? help Back to Top
Phytozome	Manes.07G131800.1.p