PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G132200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 172aa MW: 18984.7 Da PI: 8.3654

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G132200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.2	9e-41	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+l+r+C ++C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l Manes.07G132200.1.p 11 SCAACKFLKRRCIPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100 6*************************************************************************************** PP DUF260 91 kaelallkee 100 + +la ++++ Manes.07G132200.1.p 101 QFDLAIARAR 110 *9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.643	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRSHEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILTEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QFDLAIARAR LARYTANSSS 120 SAAILNDRSG LTTFSEFPAI CGGLIQSFGL SSSELNQDGL MNDLSQFPYI F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G132200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144826	1e-107	EF144826.1 Populus trichocarpa clone WS01118_L02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021618399.1	1e-124	LOB domain-containing protein 21
Swissprot	Q9SRL8	7e-67	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2C9VL13	1e-123	A0A2C9VL13_MANES; Uncharacterized protein
STRING	cassava4.1_017642m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-69	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Manes.07G132200.1.p

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]