PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G135300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 389aa    MW: 42958.2 Da    PI: 4.6988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G135300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1880131156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a+++a+++++g+
  Manes.07G135300.1.p  80 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDEAARAMHGA 131
                          56*****999.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.21E-3380140No hitNo description
PfamPF008476.3E-1380130IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2181139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3181140IPR001471AP2/ERF domain
SMARTSM003804.8E-3781144IPR001471AP2/ERF domain
PROSITE profilePS5103221.82581138IPR001471AP2/ERF domain
PRINTSPR003672.2E-98293IPR001471AP2/ERF domain
PRINTSPR003672.2E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGTFDQASNA TFRPLDSVRK RKRREGTNSV AETLQKWKEY NKYLDTCTPN GDGKPVRKAP  60
AKGSRKGCMK GKGGPENSRC NYRGVRQRTW GKWVAEIREP NRGPRLWLGT FPTAYEAALA  120
YDEAARAMHG ALARVNFPES SNSTISSKDS HSAASYSSVA TPAGSDSTTT SNHSEVCADE  180
DSKEHIVKFG DDKGESKIKP VTEPASPCST LKQEVKKELE DVSGSDCGGI PENEVPDKTV  240
LQQYNTCVQK QKESCDLQHH KDEPLDVKDY GWDNGCEGQD YWKNFTIDEM FSVDELLGAI  300
DSNPLGLDFD GGELFADDGH VQQEPPLDLS FQLQSPDDRF IGGRERVEQV PSVGDYNFDF  360
LKPGRQEDEN VPLDDQGCFS LELSNSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1881138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G135300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618998.10.0dehydration-responsive element-binding protein 2C-like
RefseqXP_021618999.10.0dehydration-responsive element-binding protein 2C-like
RefseqXP_021619000.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLA0A2C9VL720.0A0A2C9VL72_MANES; Uncharacterized protein
STRINGcassava4.1_029110m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-51ERF family protein