PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G002900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 180aa    MW: 19780.2 Da    PI: 6.7903
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G002900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.63.3e-5730126197
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdr+lPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrkt+ngddllwa++tlGfedy++plkvyl++y
  Manes.08G002900.1.p  30 VREQDRYLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTLNGDDLLWAMGTLGFEDYIDPLKVYLSRY 119
                          69**************************************************************************************** PP

                NF-YB  91 relegek 97 
                          re+e + 
  Manes.08G002900.1.p 120 REMEVDA 126
                          ****886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5325136IPR009072Histone-fold
SuperFamilySSF471131.86E-3933135IPR009072Histone-fold
PfamPF008086.8E-2836100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.6E-206482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.6E-2083101No hitNo description
PRINTSPR006158.6E-20102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAAEAPPMSP GRGSHETGEQ SPRSNSNSNV REQDRYLPIA NISRIMKKAI PANGKIAKDA  60
KETVQECVSE FISFITSEAS DKCQREKRKT LNGDDLLWAM GTLGFEDYID PLKVYLSRYR  120
EMEVDAKGSV KGGETSVKKD FQSSSNVQIS HQGSFSQGVV YANSQLQVQH MMVPMQGAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4829121193NF-YB
4awl_B6e-4829121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-4829121294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G002900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619937.11e-133nuclear transcription factor Y subunit B-8-like isoform X1
SwissprotQ8VYK47e-83NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2C9VCC81e-131A0A2C9VCC8_MANES; Uncharacterized protein
STRINGcassava4.1_017350m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-85nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]