PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G005600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 320aa    MW: 36451.3 Da    PI: 7.5248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G005600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++PwdLpkk++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk
  Manes.08G005600.1.p  11 LPPGFRFHPSDEELIVYYLKNKVDSRPLPA-SIIAELDLYKYNPWDLPKKASFGEDEWYFFTPRDRKYPNGARPNRAAASGYWKATGTDK 99 
                          79****************************.89***************9999999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l++ +++++g+kk Lvfykgr pkg ktdW+mheyrl
  Manes.08G005600.1.p 100 PILTScGTTNIGVKKALVFYKGRPPKGIKTDWIMHEYRL 138
                          ***9977888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-636165IPR003441NAC domain
PROSITE profilePS5100560.82711165IPR003441NAC domain
PfamPF023651.0E-2712138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
METIPTTEIH LPPGFRFHPS DEELIVYYLK NKVDSRPLPA SIIAELDLYK YNPWDLPKKA  60
SFGEDEWYFF TPRDRKYPNG ARPNRAAASG YWKATGTDKP ILTSCGTTNI GVKKALVFYK  120
GRPPKGIKTD WIMHEYRLLE TLAWNPKRKG SMRLDDWVLC RVRRKSSLPG SSWEDRNVPS  180
YEPAGGYFPI VMNDPSILYN DCPMLPYIFA SQNFSCNEKA SAFRFQTNDK PCTSLISDEK  240
NLQFSITSLD HLQKSCVLPS KKITKVNIES EDTVKTISDN ESMNFYGTDL SEGSHVGSVQ  300
WDSLMQHQDL HHLAFTGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-7021678167NO APICAL MERISTEM PROTEIN
1ut4_B4e-7021678167NO APICAL MERISTEM PROTEIN
1ut7_A4e-7021678167NO APICAL MERISTEM PROTEIN
1ut7_B4e-7021678167NO APICAL MERISTEM PROTEIN
3swm_A4e-70216711170NAC domain-containing protein 19
3swm_B4e-70216711170NAC domain-containing protein 19
3swm_C4e-70216711170NAC domain-containing protein 19
3swm_D4e-70216711170NAC domain-containing protein 19
3swp_A4e-70216711170NAC domain-containing protein 19
3swp_B4e-70216711170NAC domain-containing protein 19
3swp_C4e-70216711170NAC domain-containing protein 19
3swp_D4e-70216711170NAC domain-containing protein 19
4dul_A4e-7021678167NAC domain-containing protein 19
4dul_B4e-7021678167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G005600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051930.0KR605193.1 Manihot esculenta NAC transcription factors 55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619394.10.0NAC transcription factor 56-like
SwissprotQ8GY425e-83NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0M5J8Q90.0A0A0M5J8Q9_MANES; NAC transcription factors 55
STRINGcassava4.1_023969m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-85NAC domain containing protein 25
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]