PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G005700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 513aa    MW: 55917.8 Da    PI: 9.6259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G005700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-056587123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Manes.08G005700.1.p 65 FICEICNKGFQRDQNLQLHRRGH 87
                         89*******************88 PP
2zf-C2H212.70.00038142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.08G005700.1.p 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.36E-76487No hitNo description
PfamPF121716.2E-56587IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035579107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.36E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MQMMSGDAFS IPSSIPLFAP EEQNANPNPK TNPVPKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE VIRKKVYICP EKTCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESARI SSVPATNLNF RNDTVNFPRG EPAGGGVQDI AGISQFSSGF  240
RPDFNGFPSL SADQQKTGLS LWLNQANSQI NPADIVPNHA NLYASSSSTG LPEMVQMGSN  300
LYGSSSTTNF GNLKLSGLPH GLKEEEGSNK GLNMVDSLPS LYSDSHQNRQ SKPAAPMSAT  360
ALLQKAAQMG STRSNQSFFG SNSHGLMSSS SSSNTTNLNT LSQNRNELHQ VFQNVNKQPE  420
CNITVTSSVA MGDAIMVVSS GLDQVAMQSS GRQNDPFQLK VQPGSTSLES GLTRDFLGMS  480
AQSGRPFLPQ ELAKFASMSS AMGLSQFTNN PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-38138207372Zinc finger protein JACKDAW
5b3h_F4e-38138207372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191104KLRQRTNKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G005700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818416e-64LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132586e-64LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619709.10.0zinc finger protein JACKDAW-like
TrEMBLA0A2C9VC910.0A0A2C9VC91_MANES; Uncharacterized protein
STRINGcassava4.1_032876m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-107C2H2-like zinc finger protein