PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G009200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 186aa MW: 19802.4 Da PI: 7.5645

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G009200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.4	6.4e-35	28	99	6	77
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a +++s Manes.08G009200.1.p 28 SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPISTSS 99 579*********************************************************877774332222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.8E-31	29	164	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.427	30	84	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDSESTPPPA TGSQPKTTTQ LARKSSMSSS KDRHTKVNGR GRRVRMPALC AARIFQLTRE 60 LGHRSDGETI EWLLRHAEPS IIAATGTGTV PAGPISTSSG TTPVSASPLS IPCTVQVQPM 120 GGGPVHGMFP LAPPPSCRLD LEYRHMPFTA LLLQPTAIVA EEAGEQQQEE NQEVLGENNT 180 NQQKI*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G009200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621104.1	1e-134	transcription factor TCP11-like
Swissprot	Q9C518	4e-35	TCP8_ARATH; Transcription factor TCP8
Swissprot	Q9SJK7	3e-35	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A2C9VCC9	1e-132	A0A2C9VCC9_MANES; Uncharacterized protein
STRING	cassava4.1_029119m	1e-133	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-37	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.08G009200.1.p

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]