PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G018300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 214aa    MW: 24941.2 Da    PI: 8.3795
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G018300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1964117356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Manes.08G018300.1.p  64 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 117
                          55679************************************************9 PP
2HD-ZIP_I/II1185.4e-3864154292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d ++ e+++L++ev +L++ l
  Manes.08G018300.1.p  64 KKKRLTSDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDVVSVEKQKLQEEVMKLKAIL 153
                          9*************************************************************************************9877 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Manes.08G018300.1.p 154 R 154
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1953121IPR009057Homeodomain-like
SMARTSM003897.2E-1762123IPR001356Homeobox domain
PfamPF000465.7E-1764117IPR001356Homeobox domain
PROSITE profilePS5007116.56864119IPR001356Homeobox domain
CDDcd000861.35E-1564120No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2069118IPR009057Homeodomain-like
PRINTSPR000313.6E-59099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000313.6E-599115IPR000047Helix-turn-helix motif
PfamPF021831.0E-7119153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDWHSNLRTF VSRPDNSFNF LYDYRYDQFN NQGIDVKQHP AMAETPQVMV PAAMDKLSFG  60
IHDKKKRLTS DQLDSLERSF QEEIKLDPDR KMKLSRELGL QPRQIAVWFQ NRRARWKAKQ  120
LERLYDALKQ EFDVVSVEKQ KLQEEVMKLK AILREQATRK QVSTGYTEIS GEETVESTPV  180
AIRSSNGKLA ECNYVDEYNP VTSPYWAVLP SYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G018300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620231.11e-159putative homeobox-leucine zipper protein ATHB-51 isoform X2
SwissprotQ9LZR02e-55ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2C9VCP01e-158A0A2C9VCP0_MANES; Uncharacterized protein
STRINGcassava4.1_032426m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-57homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]