PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G027900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 263aa MW: 30138.7 Da PI: 7.9299

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G027900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.2	4.4e-42	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgy 82 l+pG+rF Pt+eelv++yL++k+eg++ +++vi+ +diy++ Pw+Lp+ ++++ + ++w+fF+kr++++a+g r++r t++gy Manes.08G027900.1.p 4 LAPGIRFYPTEEELVSFYLHHKLEGERddlnRLMDRVIPVLDIYEYSPWQLPQyagEFSHgDPEQWFFFIKRQENEARGGRPRRLTTAGY 93 579**********************6653223347999********645533332556********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ v+s++++ +g+k+t+vfy+grap g+kt+W m+ey+ Manes.08G027900.1.p 94 WKATGSPGYVYSSNNRCIGVKRTMVFYTGRAPLGRKTEWKMNEYK 138 ******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-45	2	166	IPR003441	NAC domain
PROSITE profile	PS51005	46.477	4	166	IPR003441	NAC domain
Pfam	PF02365	2.2E-21	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEGLAPGIRF YPTEEELVSF YLHHKLEGER DDLNRLMDRV IPVLDIYEYS PWQLPQYAGE 60 FSHGDPEQWF FFIKRQENEA RGGRPRRLTT AGYWKATGSP GYVYSSNNRC IGVKRTMVFY 120 TGRAPLGRKT EWKMNEYKTI EGEAFSSTGA NPTLRHEFSL CRVYKKSKRL RSFDRRPIGA 180 EIGRRSAHQK IQSDEGAKAR IHQNPEMVER RSSPASSSSG DHGCCFNQTG EGSSMQMAAS 240 PGDDPLWDLD QLHHWFNCLE DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	4	166	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	4	166	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	4	166	20	168	NAC domain-containing protein 19
3swm_B	2e-31	4	166	20	168	NAC domain-containing protein 19
3swm_C	2e-31	4	166	20	168	NAC domain-containing protein 19
3swm_D	2e-31	4	166	20	168	NAC domain-containing protein 19
3swp_A	2e-31	4	166	20	168	NAC domain-containing protein 19
3swp_B	2e-31	4	166	20	168	NAC domain-containing protein 19
3swp_C	2e-31	4	166	20	168	NAC domain-containing protein 19
3swp_D	2e-31	4	166	20	168	NAC domain-containing protein 19
4dul_A	2e-31	4	166	17	165	NAC domain-containing protein 19
4dul_B	2e-31	4	166	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G027900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605198	0.0	KR605198.1 Manihot esculenta NAC transcription factors 60 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621396.1	0.0	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-71	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0M5JCR3	0.0	A0A0M5JCR3_MANES; NAC transcription factors 60
STRING	cassava4.1_026167m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-73	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Manes.08G027900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]