PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G034700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 331aa    MW: 36027.8 Da    PI: 10.0429
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G034700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.11.2e-27161218158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          d p++VN+KQy++I++RR++Rak+   e+k+ +k+rkpy+h SRh hA+rRpRg gGrF
  Manes.08G034700.1.p 161 DGPIFVNPKQYHGIIRRRKTRAKAVLlESKT-TKKRKPYMHLSRHLHAMRRPRGIGGRF 218
                          57*********************99867788.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-29159221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.376160221IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-24163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-19163185IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-19195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAVKTLYFKE HEGIIHNPIG QLSSVPSVPW WSTFGSQSAC GESFGILKPS SMEQQPSTGG  60
LTAMKQASRG TEQGLDKGNT TQFPIFPGDC KTSGYGQKSP QRAISLQTAL PEYRAHIDLG  120
FGQPMIYAKY PHADQCYGVF STYGPQISGR IMLPMNMTTD DGPIFVNPKQ YHGIIRRRKT  180
RAKAVLLESK TTKKRKPYMH LSRHLHAMRR PRGIGGRFLN TKTSNDAINE TEANKAGGGQ  240
IYQRTGSQSS EVLQSDSGTL NSSKEASGGG SNLSGSEVTS MYTRRNLDHF AINHLASQVQ  300
AFSVMMDGGH GIIMSNKWVA AADNCCNLKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-15161219260HAPB protein
4g92_A3e-15161219260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176194RRKTRAKAVLLESKTTKKR
2176195RRKTRAKAVLLESKTTKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G034700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621115.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2C9VED70.0A0A2C9VED7_MANES; Uncharacterized protein
STRINGcassava4.1_011620m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.28e-67nuclear factor Y, subunit A10