PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G035700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family YABBY
Protein Properties Length: 173aa    MW: 18974.3 Da    PI: 7.883
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY168.16.2e-5251584170
                YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh.ldeslkeelleelkveeenlksnvekeesa 92 
                          + +se vCyv+CnfCnt l+v+vP +  ++vvtv+CGhC++lls+n +      + + h l++ lk++       ++       e++  +
  Manes.08G035700.1.p   5 NIASECVCYVHCNFCNTNLVVNVPGNITVNVVTVKCGHCSNLLSLNTEAL----PQNTHnLQNVLKQN----IFYQD-----LSEESG-S 80 
                          56899***************************************886554....44443022233332....22222.....222222.2 PP

                YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          s+s++++  ++++++e pr+  v     krqr+Psayn+fikeei+r+k +nP+i+h+eafs+aaknWah+P+  fgl
  Manes.08G035700.1.p  81 SKSTEVSASDSSSENEHPRTLSVHGTMGKRQRAPSAYNKFIKEEIRRLKINNPKITHKEAFSTAAKNWAHLPHTDFGL 158
                          2222222335566778899999999**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-577158IPR006780YABBY protein
SuperFamilySSF470951.13E-6106153IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.0E-5111153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSLHNIASEC VCYVHCNFCN TNLVVNVPGN ITVNVVTVKC GHCSNLLSLN TEALPQNTHN  60
LQNVLKQNIF YQDLSEESGS SKSTEVSASD SSSENEHPRT LSVHGTMGKR QRAPSAYNKF  120
IKEEIRRLKI NNPKITHKEA FSTAAKNWAH LPHTDFGLTL NGNIKEIEGQ GA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619933.11e-125protein YABBY 2-like isoform X2
SwissprotQ10FZ76e-50YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2C9VFE11e-124A0A2C9VFE1_MANES; Uncharacterized protein
STRINGcassava4.1_031977m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-44YABBY family protein