PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G043900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32950.1 Da    PI: 7.4274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17173227256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Manes.08G043900.1.p 173 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 227
                          778899***********************************************98 PP
2HD-ZIP_I/II128.33.2e-41173263192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Manes.08G043900.1.p 173 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-A 261
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  Manes.08G043900.1.p 262 LK 263
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-5101136IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.56E-18164230IPR009057Homeodomain-like
PROSITE profilePS5007116.86169229IPR001356Homeobox domain
SMARTSM003895.4E-15171233IPR001356Homeobox domain
CDDcd000864.37E-16173230No hitNo description
PfamPF000463.5E-15173227IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-17173227IPR009057Homeodomain-like
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
CDDcd146860.00409222261No hitNo description
PfamPF021835.7E-11229263IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26229272IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MELALSLGDT SKPFEFLHHT PKVSAKDLGF CMGLPTGFTA SPRSHDKVVD TNLHGEAAAT  60
GVSSDPPVQL DLLPFSPVPR RLPPSQTPFP WLSDNLVSEP GSTDGSGRGF DVNRLSAEEA  120
EEGAAMSSPN SAVSSFQMDF GIRSRRYKRD MEAIDAERAS SRASDDEENG LTRKKLRLSK  180
EQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  240
CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTN TSPSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177TRKKLRL
2221229RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G043900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629443e-98AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620574.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466652e-99HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2C9VDD10.0A0A2C9VDD1_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_010584m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-87homeobox from Arabidopsis thaliana