PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G047200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 369aa    MW: 40579.3 Da    PI: 8.6669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G047200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13296341655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Manes.08G047200.1.p 296 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 341
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-15293352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-12294343No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14295351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-13296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSNSNHSYH HQNSQPGSGL LRFRSAPSSL LANFNDNGVT NDSVLNFQEL EDKSAVRVRE  60
APLSYANSQQ TYFGLPPHYP RQSSATTTTM DSSYGLIGSM AMGHSEQAKR VDSNLARQNS  120
TPAGLFSNLS VQNGYAAMKG IGNFAGAKAT NGEASPRLKS QLSFPARIPS SLGTLLQISE  180
TESEAIDATD PHSGKLGDSN CDSQFYSSSG FPYGSWNDSH FAENYIGMKR DPDDNGKLYS  240
NIQNGELGNR IHVLSHHLSL PKASVDMVAM EKFLHFQDSV PCKIRAKRGC ATHPRSIAER  300
VRRTRISERM RKLQELVPNM DKQTNTADML DLAVEYIKDL QKQYKTLVDN RANCKCLSKQ  360
QAVPNPIL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G047200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619264.10.0transcription factor bHLH130 isoform X1
SwissprotQ66GR31e-108BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2C9VDG30.0A0A2C9VDG3_MANES; Uncharacterized protein
STRINGcassava4.1_010104m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]