PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G051600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 241aa    MW: 27729.4 Da    PI: 9.1836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G051600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33271182102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y ++ed++++++isw+ +g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF ++ F+k ++
  Manes.08G051600.1.p  27 FLLKTYMLVEDPATDQVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTSR---------WEFCNDMFRKAER 107
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++i+r+k 
  Manes.08G051600.1.p 108 ELLCQIRRRKA 118
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGSTALDNNN SNKGFFEYVR KSTPPPFLLK TYMLVEDPAT DQVISWNGDG TGFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV TTSRWEFCND MFRKAERELL CQIRRRKAWS  120
NKQQPTVPIQ TTPQDSDEDQ RSSSTSSSSE YSILIDENKR LKKENGVLSS ELTGMKRKCK  180
ELLDLVAKYA HFEKEEEDDD SDKRPKLFGV RLEVGGDREM KRKRAKIREC ATVLLSQSCK  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-20221162106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-20221162106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G051600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619474.11e-180heat stress transcription factor B-3-like
SwissprotO222304e-73HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2C9VFG91e-178A0A2C9VFG9_MANES; Uncharacterized protein
STRINGcassava4.1_015016m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-64heat shock transcription factor B3