PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G058700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 245aa    MW: 27253 Da    PI: 9.2446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G058700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.9e-1571123155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ +hn+ Er RR+++Ns ++ Lr+llP a   + kKls a+++  + +YI +Lq
  Manes.08G058700.1.p  71 KKLNHNASERHRRKKMNSLYSSLRSLLPAA--DQMKKLSIAATVSGVLKYIPELQ 123
                          6789*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.65970122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1471141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1671140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-571127No hitNo description
SMARTSM003535.1E-1176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLALSPPVFP AYGWPLEDPI GHEHIYFSRE SEKTINSIDN ANFFQPQPPQ TLELDHSASF  60
TYHSGDPNMV KKLNHNASER HRRKKMNSLY SSLRSLLPAA DQMKKLSIAA TVSGVLKYIP  120
ELQGQVERLV QRKEELFSKL AKQDNQSGKK QIQQKKGINR GSLSAVSATH VSESEVVIQI  180
SSFGVRTTPL SELLVHLEKE GLSLISSSSF ESSGGRVFLN LHLQVEGSYR LEQEALSEKL  240
LSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G058700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620132.11e-178transcription factor ORG2-like isoform X1
TrEMBLA0A2C9VFN81e-176A0A2C9VFN8_MANES; Uncharacterized protein
STRINGcassava4.1_030779m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-42bHLH family protein