PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G085700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 246aa    MW: 28177 Da    PI: 10.2218
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.72.2e-111298286
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                         W++  + +Li+a  e+  +lrrg+lk+++W+ev++ +      ++ +++ +qCk++ + ++k+ k +k+    +  +  s++p+f++l+
  Manes.08G085700.1.p 12 WSEGATAELIDAWGERYLKLRRGNLKQKHWKEVADIVssreDYKKATKTDIQCKNRNDTVKKKNKLEKAKIAAG--GGPSKWPFFKRLD 98
                         *************************************86555556678999***************99999987..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-2210100No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
LKINGGGRED YWSEGATAEL IDAWGERYLK LRRGNLKQKH WKEVADIVSS REDYKKATKT  60
DIQCKNRNDT VKKKNKLEKA KIAAGGGPSK WPFFKRLDQL IGPTAKSQDP FPTGIPVGIH  120
SGGASGSNQY QFHEGKAQMK SNQITKNFPD SEDSLPSKKK SREVVQREVN TKEFEQAKSM  180
KLQQVVEMEK TRMKFARELE LQRMQFFMKT QMEIRRGEND REENDKGEES NLLPHKVINF  240
SDQIL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609286.11e-117trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-49ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2C9VG570.0A0A2C9VG57_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_021780m1e-158(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-45sequence-specific DNA binding transcription factors