PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G099700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 473aa    MW: 51664.6 Da    PI: 7.8121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G099700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.5e-057597123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C+k F r  nL+ H r H
  Manes.08G099700.1.p 75 YICEVCHKGFQRDQNLQLHRRGH 97
                         89*******************88 PP
2zf-C2H213.10.00028151173123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H + +
  Manes.08G099700.1.p 151 WKCDKCSKRYAVQSDWKAHTKIC 173
                          58*****************9987 PP
3zf-C2H211.10.0013181199523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg+ Fsrk+++++H   +
  Manes.08G099700.1.p 181 DCGTIFSRKDSFVTHRAFC 199
                          8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.69E-67497No hitNo description
PROSITE profilePS5015710.7417597IPR007087Zinc finger, C2H2
SMARTSM003550.0387597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355190116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.69E-6146171No hitNo description
SMARTSM00355130151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSNFSQEFED DEQFQSTIVS QSSYGSPNPT ENVLDGSVPT SSASTKKRRN LPGNPDPDAE  60
VVALSPRTLM ATNRYICEVC HKGFQRDQNL QLHRRGHNLP WKLKQRPTTQ VKKRVYVCPE  120
PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHT KICGTREYRC  180
DCGTIFSRKD SFVTHRAFCD ALAEENYKAN QTLAAPGGIL QSQVQELFTS TMPSSDSCSK  240
KSSMMNLTMS DENIDNSRRP LSLNSTGITM SSNLNPILNP RTSLACFSSA DGSNISPMAM  300
GSAFTSATAL LQKAAEMGAK ISDNSIAPIL LRGFAGYPPS NMNSSGSAPE GSSLVGSNME  360
PTAANMNSFC VGDTETLDNN FDPGYSRNGY TTISQTGLFD STLNMHSENG NASNSLGGEV  420
YMGRGEKMTL DFLGVEPTGH TTIGRKQNYE GNMMGLGYSH GNQNLNNLHS DW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33147205361Zinc finger protein JACKDAW
5b3h_F8e-33147205361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G099700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619815.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2C9VHA60.0A0A2C9VHA6_MANES; Uncharacterized protein
STRINGcassava4.1_024252m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]