PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G099800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 275aa    MW: 29891.5 Da    PI: 4.4258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G099800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-193381355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Manes.08G099800.1.p 33 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                         67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-333295IPR001471AP2/ERF domain
PROSITE profilePS5103220.5873289IPR001471AP2/ERF domain
CDDcd000181.69E-283288No hitNo description
Gene3DG3DSA:3.30.730.102.0E-283389IPR001471AP2/ERF domain
PRINTSPR003673.4E-83344IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-213390IPR016177DNA-binding domain
PfamPF008479.2E-123581IPR001471AP2/ERF domain
PRINTSPR003673.4E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDFTNSSSPS PSPSKTKRKQ QNEQQEPHQE VRFLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GFKARTNFVY SDMPAGSSVT SIISPDETQH EISALFAPAR  120
QYNQNSNTNQ NQQVLFTQDC TFNASFLYAN SCGLVTGGDG WVQGAEAGGS FQPVSATMDA  180
SGSNNCSGDS IELPPLPPDM TSSCYYGSEV SDGFWKETNF FGFSEEVSNA ASGPYLGFDS  240
NEFVQQGPFP GRAPSVSDTV TEGLDLGSSS AFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1832881471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G099800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621814.10.0ethylene-responsive transcription factor ERF087
TrEMBLA0A2C9VG970.0A0A2C9VG97_MANES; Uncharacterized protein
STRINGcassava4.1_025049m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.17e-40ERF family protein