PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G103500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 504aa    MW: 54873.4 Da    PI: 5.2138
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-061150437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           C+ + ++ + l+C+ ++  lC  C ++ H+       H
  Manes.08G103500.1.p 11 VPCDFCTDQVAVLYCRADSAKLCLFCDQHVHSAnllsrkH 50
                         68***************************99545555555 PP
2zf-B_box284.5e-095398342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+++ +++++  C +++  lC++C l  H +      H+++p+
  Manes.08G103500.1.p 53 SQICDNCTSEPVSVRCATDNLVLCQECDLDAHGSnfvsasHDRTPI 98
                         579*****************************44889999998876 PP
3CCT63.37.5e-22455498144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R  a++RYkeK+ktR+++++irYesRKa+A++R+RvKGrFvk++
  Manes.08G103500.1.p 455 RGTAMQRYKEKKKTRRYDNHIRYESRKARADTRKRVKGRFVKAT 498
                          6789**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-10855IPR000315B-box-type zinc finger
PROSITE profilePS501199.485855IPR000315B-box-type zinc finger
CDDcd000214.21E-71143No hitNo description
PROSITE profilePS5011910.2815198IPR000315B-box-type zinc finger
PfamPF006431.1E-65498IPR000315B-box-type zinc finger
CDDcd000217.20E-75598No hitNo description
SMARTSM003360.115698IPR000315B-box-type zinc finger
PROSITE profilePS5101714.475455497IPR010402CCT domain
PfamPF062033.0E-16455497IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGTPKSETTQ VPCDFCTDQV AVLYCRADSA KLCLFCDQHV HSANLLSRKH LRSQICDNCT  60
SEPVSVRCAT DNLVLCQECD LDAHGSNFVS ASHDRTPIEG FSGCPSAMEL ALIWGFDLDE  120
KKLDDPSTSL IPSWSGCGVQ DVVMQVEPWM CRSNGGVSYL DLIVPNDKAT VYGNVNNVEM  180
VTMSKEQQSP TCGKYKHLIY KQLVELLNRN LITGDGGGGD GGGGGGDNLM PQTPNRSCWQ  240
GNVEAADFGN GNASNVASST VPQQPLQEQA PFTSLLMMPS QMDLKPSGQV AGEDLIWDGN  300
ANAQGTQIWD FHLGQLRTHE ESDQLELAYG STDAGFVINN IGEFMKEASL SNAKILGDRY  360
QLDCPFACDD MSLFNLKLQN NSNNATASQG PATSESNNLS IARPSSGSTF SKLKSSSGGK  420
DSQFMDMEQK ILVTGDSVST MLATKADMEL LAKNRGTAMQ RYKEKKKTRR YDNHIRYESR  480
KARADTRKRV KGRFVKATDA PNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G103500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619684.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A2C9VGD40.0A0A2C9VGD4_MANES; Uncharacterized protein
STRINGcassava4.1_006403m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-105B-box type zinc finger protein with CCT domain