PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G119800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 155aa    MW: 17435.6 Da    PI: 6.7806
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G119800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.89.6e-51398297
                NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                          eqdr+lP+anv+rimk++lP  akisk+ak+t+qec++efisfvt+easdkc++e+rktingdd++w+l++lGf++y+e++  yl+kyre+
  Manes.08G119800.1.p  3 DEQDRLLPVANVGRIMKQILPPTAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTINGDDICWSLSSLGFDNYAEAIVRYLHKYREA 94
                         69****************************************************************************************** PP

                NF-YB 94 egek 97
                         e+e+
  Manes.08G119800.1.p 95 ERER 98
                         *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-502121IPR009072Histone-fold
SuperFamilySSF471134.04E-395125IPR009072Histone-fold
PfamPF008081.6E-25871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.4E-193654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.4E-195573No hitNo description
PRINTSPR006159.4E-197492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVDEQDRLLP VANVGRIMKQ ILPPTAKISK EAKQTMQECA TEFISFVTGE ASDKCHKENR  60
KTINGDDICW SLSSLGFDNY AEAIVRYLHK YREAERERAN QNKATSTANT QDKVEEDLNF  120
TSTQHEIQTE ITPAPLMKFR VLEKGNSSSP KKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-41293192Transcription factor HapC (Eurofung)
4g92_B3e-41293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G119800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620249.11e-114nuclear transcription factor Y subunit B-4
SwissprotO040272e-61NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2C9VHL01e-112A0A2C9VHL0_MANES; Uncharacterized protein
STRINGcassava4.1_026425m1e-113(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-64nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]