PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G129400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 121aa    MW: 13402.1 Da    PI: 7.979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G129400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-1187111126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+ fa+ G C +G +C+FaH+
  Manes.08G129400.1.p  87 FKTKLCKKFAE-GSCTFGTSCRFAHS 111
                          79*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003223.7E-5676IPR004087K Homology domain
PROSITE profilePS5008411.322771IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.3E-11877IPR004088K Homology domain, type 1
SuperFamilySSF547913.34E-12878IPR004088K Homology domain, type 1
PfamPF000131.1E-7972IPR004088K Homology domain, type 1
CDDcd001053.05E-10970No hitNo description
Gene3DG3DSA:4.10.1000.107.0E-1780116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-983116IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-786112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.60586113IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-987111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MVWVGAAETT KLSVDASLAG AIIGKHGGNQ KRIWRVTGAH FSIREHETDP NLRNIEFEGT  60
CNQINDAIAL FREQIEDISQ VFRPNNFKTK LCKKFAEGSC TFGTSCRFAH SAEELRWSGT  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G129400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664816.12e-44zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-35C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9VFV04e-84A0A2C9VFV0_MANES; Uncharacterized protein
STRINGcassava4.1_021703m4e-80(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-37C3H family protein