PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G132700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 616aa    MW: 70444.3 Da    PI: 6.6971
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G132700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-16114175268
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                          W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ ++
  Manes.08G132700.1.p 114 WSNDEVLALLRIRSSMENWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINCSK 175
                          ********************998.....9*******************************9988665 PP
2trihelix97.89.3e-31458544186
             trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k+evlaLi++r+++ ++ +  ++  k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyfdql+
  Manes.08G132700.1.p 458 RWPKDEVLALINLRSNLYNSNEdkETTVKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPYFDQLN 544
                          8**************8888777225679********************************************8.78889*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071716110167IPR001005SANT/Myb domain
PfamPF138373.3E-11112175No hitNo description
PROSITE profilePS500906.284113165IPR017877Myb-like domain
SMARTSM007170.014455519IPR001005SANT/Myb domain
PfamPF138371.0E-20457545No hitNo description
CDDcd122031.52E-24457524No hitNo description
PROSITE profilePS500907.015458517IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MFEGVPDQFH QFIASRTSLP LPHSFSPLHG SSSTSTATFS SFDPYTSHHQ QLPLHHHHHH  60
HHQQQHHQQP NFLHPLHQSS PPASKNEDKE ESNMAAINLE IVRERSLQES IDPWSNDEVL  120
ALLRIRSSME NWFPEFTWEH VSRKLAELGF KRSAEKCKEK FEEESRYFNN INCSKNYRVF  180
VELEEIYHGD NQNPQGMAVG KNKKMDEAAE EEDKMEQNVE EDSRIDQTVG NPSEGNGKGV  240
EKSKNKKRKR QKKFDMFKCF CEDIISKIMA QQEEMHNKLL EDMVKRDEEK LAREEAWKKQ  300
EMDRINKELE LRAQEQALEG DRQEKIINFL KKFSSSTGSC IEILREVNAQ YLLKGTNSSN  360
PSSSSSLMLQ QNPNPTSQTN DQNKPETPIS ITIGLTSLMP ENVASLNPSS TLGASSSPSS  420
QAPQTQNSNY PNFQSNPLST ETVQKKATSN DKEDLGKRWP KDEVLALINL RSNLYNSNED  480
KETTVKAPLW ERISQGMSEL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SVDSRTCPYF  540
DQLNTLYNQG TLIIAPSSDQ GPQKLRLPAS PEKHSAYNTL MSSSQNGYAN STLHNVGDEG  600
EKNLVHDQPA LDFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245252KKRKRQKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G132700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642028e-33JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620176.10.0trihelix transcription factor GTL2-like
SwissprotQ8H1811e-103GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A2C9VHJ90.0A0A2C9VHJ9_MANES; Uncharacterized protein
STRINGcassava4.1_023137m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-44Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]