PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G134700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 332aa    MW: 34981.5 Da    PI: 6.0391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G134700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10181225554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+a      K + a++L + v+Y+k L
  Manes.08G134700.1.p 181 HSIAERLRRERIAERMKALQELVPTA-----NKTDRAAMLDEIVDYVKFL 225
                          99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15174236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-11174230No hitNo description
PROSITE profilePS5088816.329176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15178238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7181225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA VQPGYGGGGG GGSGGGAEVV GSTMPMMGLQ LGTPGAGGLR  60
TNNIGMMPLG LNLEHHGFLR QQEDGGGALD DINHANNNVS SSSTTSGINE RDSVHMASLF  120
PTFGQLQTQS IRPTPPPPPP GPRHHQPFHG QPTPGAVSAV SQPPAIRPRV RARRGQATDP  180
HSIAERLRRE RIAERMKALQ ELVPTANKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGAA  240
GAVAQLVADV PLSLAEGESI EGANQQAWEK WSNDGTEQQV AKLMEEDIGA AMQFLQSKAL  300
CIMPISLASA IFQTHPPDPP SIVKPESNTP S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G134700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619390.10.0transcription factor bHLH7-like
SwissprotO227682e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2C9VFZ70.0A0A2C9VFZ7_MANES; Uncharacterized protein
STRINGcassava4.1_011595m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]