PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.08G140700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ZF-HD

Protein Properties

Length: 179aa MW: 20046.4 Da PI: 8.3972

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.08G140700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.3	5.1e-30	20	75	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC++NhA+ +Gg+a DGCgEf+p+ g++gt++al C AC+CHRnFHR+e Manes.08G140700.1.p 20 TTIKYRECRRNHAVLIGGYAADGCGEFTPK-GDQGTKEALLCEACDCHRNFHRKELI 75 5789***********************9.9999*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-17	21	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.0E-28	22	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-26	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.22	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MLMANSKSKS KQLHEESTET TIKYRECRRN HAVLIGGYAA DGCGEFTPKG DQGTKEALLC 60 EACDCHRNFH RKELIKNGTA FPGSQHFPSP YGLRCPMGKE RNVSGFYYPL PAVSSQPSPS 120 PYCHHCWQRN VQSLVSDEES VIYNGSENEM QTKTGKRPKK GTHINAEQEK SGHYDLHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.08G140700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620800.1	1e-133	zinc-finger homeodomain protein 4-like
TrEMBL	A0A2C9VG80	1e-132	A0A2C9VG80_MANES; Uncharacterized protein
STRING	cassava4.1_032076m	1e-113	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	6e-23	homeobox protein 33

Link Out ? help Back to Top
Phytozome	Manes.08G140700.1.p