PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G147800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 366aa    MW: 40500.8 Da    PI: 8.2914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G147800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-5281451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Manes.08G147800.1.p   8 LPPGFRFHPTDEELILHYLKKKIASTPFPV-SIIADVDIYKFDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 96 
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + ++            +e++g+kk Lvfykgr pkg kt+W+mheyrl
  Manes.08G147800.1.p  97 VIAASsairggagvgsVQENIGVKKALVFYKGRPPKGIKTNWIMHEYRL 145
                          **998777766666554455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-635179IPR003441NAC domain
PROSITE profilePS5100560.0898179IPR003441NAC domain
PfamPF023651.2E-279145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MKNPQSSLPP GFRFHPTDEE LILHYLKKKI ASTPFPVSII ADVDIYKFDP WDLPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIAA SSAIRGGAGV GSVQENIGVK  120
KALVFYKGRP PKGIKTNWIM HEYRLTDAPA YNVKPIKPKD SSSSAMRLDD WVLCRIYKKT  180
HASSPSAAAA AAAAASDHDQ EEEEEEEQLV QETLVPSLKN PPSNKSLMPQ KSSSFSNLLD  240
AMDYSILRSF LSDNQLHPTG YDSTPAPVPV GAIPDQPFFN NCNPLINSSS SSSFLIQKPT  300
QLSDPIPNME NKLKRPLPTI DEDMNPHPSK KFINCCSFTN STTQTDMAHQ LNFLNPPFLN  360
TSNYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-72518314169NO APICAL MERISTEM PROTEIN
1ut4_B4e-72518314169NO APICAL MERISTEM PROTEIN
1ut7_A4e-72518314169NO APICAL MERISTEM PROTEIN
1ut7_B4e-72518314169NO APICAL MERISTEM PROTEIN
3swm_A4e-72518317172NAC domain-containing protein 19
3swm_B4e-72518317172NAC domain-containing protein 19
3swm_C4e-72518317172NAC domain-containing protein 19
3swm_D4e-72518317172NAC domain-containing protein 19
3swp_A4e-72518317172NAC domain-containing protein 19
3swp_B4e-72518317172NAC domain-containing protein 19
3swp_C4e-72518317172NAC domain-containing protein 19
3swp_D4e-72518317172NAC domain-containing protein 19
4dul_A4e-72518314169NAC domain-containing protein 19
4dul_B4e-72518314169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G147800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621208.10.0NAC transcription factor 47-like
SwissprotQ84TD61e-109NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A2C9VGG00.0A0A2C9VGG0_MANES; Uncharacterized protein
STRINGcassava4.1_010191m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-100NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]