PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G149300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 302aa    MW: 33593.6 Da    PI: 6.924
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G149300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17230264135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Manes.08G149300.1.p 230 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 264
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-14224278IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.372224260IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15225288No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13228262IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.24E-11229276No hitNo description
PfamPF003206.0E-15230264IPR000679Zinc finger, GATA-type
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFYQNVTVS GEYHQQEQLL PSPSHCSKLG AAITLTSSLD DLFSAQNSED VSLEWLSVFV  60
EDCLSSSGNC LPAAPTASVQ NINTTPNLSK PLKQKPQQNP QSSLERFVIP GKARSKRKRV  120
TSLNTRNPLS SWSYGHQILH FPSSDPPLLQ QAYWLADSEL IMPKKETTTT NTATTTTCNI  180
KRRDDEVQEE ETREEEEDID EELEEVAVNN NGKGSLAILE NNSGQQPRRC THCLAQRTPQ  240
WRAGPLGPKT LCNACGVRYK SGRLLPEYRP AKSPTFVSYL HSNSHKKVME MRMAGSAHFN  300
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G149300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620703.10.0GATA transcription factor 5-like
TrEMBLA0A2C9VIF20.0A0A2C9VIF2_MANES; Uncharacterized protein
STRINGcassava4.1_012704m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-35GATA transcription factor 4