PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G154100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 226aa    MW: 24618.9 Da    PI: 7.5362
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G154100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65e-39311321101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++
  Manes.08G154100.1.p  31 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVAS 120
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+++++l
  Manes.08G154100.1.p 121 LQAELAMVQTQL 132
                          *******99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74430132IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3831129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MADPQCDTRR KAIGKRASAM QVETKSVAVA PCGACKFLRR KCISGCIFAP HFGSDQGAAR  60
FAAVHKVFGA SNVSKLLLHI PVNRRHEAVV TISYEAQARL SDPVYGCVST ILALQQQVAS  120
LQAELAMVQT QLINSRFIMA NVLQNSQQQQ HMAMLQPAYS NNSSASTNLI HMSSFTSNFD  180
LVTDTAPSSH SLDPLQLSRP SLDEEDEEQE SQIPGIFDGE GFHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37241334112LOB family transfactor Ramosa2.1
5ly0_B1e-37241334112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G154100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621221.11e-168LOB domain-containing protein 20-like
SwissprotQ9SRV39e-83LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2C9VIZ11e-166A0A2C9VIZ1_MANES; Uncharacterized protein
STRINGcassava4.1_028764m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-69LOB domain-containing protein 20