PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G161500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 232aa    MW: 25727.8 Da    PI: 8.2581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G161500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-0581103123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F+++  L  H++ H
  Manes.08G161500.1.p  81 FHCKYCNKKFTNSQALGGHQNAH 103
                          78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-777109No hitNo description
Gene3DG3DSA:3.30.160.603.4E-481107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.11381108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSEESSQWDV DNRKMKRKVQ EEPMSIPEET DLSLDLRLSS NEVDVDEPKL ELNLLGFLDH  60
GSGKGLESGD RNKKTEGKRF FHCKYCNKKF TNSQALGGHQ NAHKRERSLQ KREKGLDLVP  120
YRFMGASLYP FAGTGGSEFP NHGISMFPKP PYRFSLHHGG PGFAYEGWSR PPAMNPQASM  180
QDNRWAANGA FPPLELMGMN RRPPLGSRVE SSSLANLNVG GGGGHLDHDL S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G161500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619260.11e-171zinc finger protein 3-like
TrEMBLA0A2C9VGS31e-170A0A2C9VGS3_MANES; Uncharacterized protein
STRINGcassava4.1_026145m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-15zinc finger protein 3