PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G165800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 830aa    MW: 89785.4 Da    PI: 5.7985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G165800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.13.2e-1274438002374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs++++e+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y++lp+ + s  ++++ ++a+++f+ +sP++
  Manes.08G165800.1.p 443 LTLLLQCAEAVSADNFEEANKILLEISELSTPYGTSAQRVAAYFSEAMSARLVNSCLGIYATLPSVPLS--HTQKMASAFQVFNGISPFV 530
                          579**************************************************************9998..5889999************ PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Manes.08G165800.1.p 531 KFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPSGPPYVRLTGLGT----SMETLEATGKRLSDFAQKLGLPFEFFP- 615
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl
  Manes.08G165800.1.p 616 VAEKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSL 698
                          7*************************9..999999999999....**********************.899******************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wr++l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lg
  Manes.08G165800.1.p 699 GASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGELK-FHNWRDKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLG 787
                          *********************************887776.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Manes.08G165800.1.p 788 WKDLCLLTASAWR 800
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.298416780IPR005202Transcription factor GRAS
PfamPF035141.1E-124443800IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MSASELFSEN GRDADLNGSC SNNNRNNSSK GEEPIIGIQG KGKMVRKRMA CEMMEVQTAD  60
QNQRCYRRIS GGGGTTDSLP EDNIIGCTSS LTNIINPNQN QNQNQNPNPN PYPVLNYSTM  120
TVLPSSTNLT SMTSGGSVSV SLCGFLSSTG TTNFSSNDFL SSSSQLQAPA VCGFSGLPLF  180
PSERDRQRNA AVPVVLSTSS TTGGGGAAAA AAAAATAITM DDASATAWID GIIKDLIHSS  240
ANVSIPQLIQ NVREIIFPCN PSLASLLEYR LRSLAEPIPN YPVDRRRKEA LPHRDYSNQV  300
QASSGLTLNL ENVNSYTSLP DSTAAVATAS PVVNQYSSWG TTPSLVCQGN NQQLHHQLQL  360
LHDEQQQQES PSSTSVTPPL LALNQGHPQQ QEYEKSSSAE TEQVANTGIA TTPTSVAAAG  420
ISSREKKEEL RQQKRDEEGL HLLTLLLQCA EAVSADNFEE ANKILLEISE LSTPYGTSAQ  480
RVAAYFSEAM SARLVNSCLG IYATLPSVPL SHTQKMASAF QVFNGISPFV KFSHFTANQA  540
IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI LASRPSGPPY VRLTGLGTSM ETLEATGKRL  600
SDFAQKLGLP FEFFPVAEKV GNLDPEKLNV SKREAVAVHW LQHSLYDVTG SDTNTLWLLQ  660
RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSRE  720
IRNVLAVGGP SRSGELKFHN WRDKLQQSGF KGISLAGNAA TQATLLLGMF PSDGYTLVED  780
NGALKLGWKD LCLLTASAWR PFHGITANAT AIATTSIHNQ YHLQRFATV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04268013380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G165800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619939.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2C9VGW10.0A0A2C9VGW1_MANES; Uncharacterized protein
STRINGcassava4.1_001986m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein