PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G016300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 247aa    MW: 27695.6 Da    PI: 8.0569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G016300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-242989259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                         dDgy+WrKYGq+ + + ++pr+Y+rCt++   gC ++k+v+r aedp+ + +tY g+H ++
  Manes.09G016300.1.p 29 DDGYSWRKYGQRIILNCRYPRNYFRCTHKydqGCLATKQVQRIAEDPSNFRTTYFGHHSCS 89
                         8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.2182391IPR003657WRKY domain
SuperFamilySSF1182901.83E-242690IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-242789IPR003657WRKY domain
SMARTSM007743.7E-342890IPR003657WRKY domain
PfamPF031065.8E-232988IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAHSVNSSRG SVKLNRSLSW IRESPFFIDD GYSWRKYGQR IILNCRYPRN YFRCTHKYDQ  60
GCLATKQVQR IAEDPSNFRT TYFGHHSCSF TPKDAEIVTT DPNPWKEEDI QLCFDRPKIQ  120
RNTTGCDLNL NLKLPTIDPI HRRSVNITRS DSFASYMATA NSKISGKKNH LSSNQESAEE  180
ASVGPDNSYS SVELNLGKDL RSFVSAEASM SSDYGSTEYS SSTSKSSGMS SGAEPIDFDA  240
GFCFHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-222888868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G016300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276210.0KT827621.1 Manihot esculenta WRKY transcription factor 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624193.10.0probable WRKY transcription factor 30
TrEMBLA0A140H8Q00.0A0A140H8Q0_MANES; WRKY transcription factor 46
STRINGcassava4.1_014812m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-25WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]