PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G020300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 242aa    MW: 27969.5 Da    PI: 7.8545
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G020300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.35e-33281192102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y ++ed++++++isw+e+g  fvv+++ +fa ++Lp+ Fkhsnf+SF+RQLn+YgF+kv +++         weF ++ F+kg++
  Manes.09G020300.1.p  28 FLLKTYMLVEDPATDHVISWNEDGIGFVVWQPAQFACDLLPTLFKHSNFSSFIRQLNTYGFRKVATSR---------WEFCNDMFRKGER 108
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++i+r+k 
  Manes.09G020300.1.p 109 ELLCQIRRRKA 119
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3521112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5124117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3224117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESAATDNNN NINKRLLEYV RKSTPPPFLL KTYMLVEDPA TDHVISWNED GIGFVVWQPA  60
QFACDLLPTL FKHSNFSSFI RQLNTYGFRK VATSRWEFCN DMFRKGEREL LCQIRRRKAW  120
TNKQQPTAPT QATPEESDED QKSSSTSSSS EYSTLIDENK RLKKENWVLS SELTSTKRKC  180
KELLEMVAKY AHLEKEENGN GDDDDERPKL FGVRLEVGGE RKRKRDEIRE YATILLAQSC  240
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-192311715120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G020300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622679.10.0heat stress transcription factor B-3-like
SwissprotO222307e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2C9V7691e-180A0A2C9V769_MANES; Uncharacterized protein
STRINGcassava4.1_014976m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-64heat shock transcription factor B3