PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G032700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 117aa MW: 13138.2 Da PI: 7.9329

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G032700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C+ dC+++pyfp+++p++f +vhk++Gasnv k+l++lp++ r a+++l+yeA++r++dPvyG+vg+i+ l qq++++ Manes.09G032700.1.p 5 RCAACKYLRRRCPLDCIFSPYFPSNDPERFSCVHKIYGASNVGKMLQQLPDHLRAPAADCLCYEARCRIQDPVYGCVGIISLLDQQIQTA 94 6*************************************************************************************** PP DUF260 91 kaelallkee 100 +++la++k+e Manes.09G032700.1.p 95 ENQLAETKAE 104 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.037	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MIYGRCAACK YLRRRCPLDC IFSPYFPSND PERFSCVHKI YGASNVGKML QQLPDHLRAP 60 AADCLCYEAR CRIQDPVYGC VGIISLLDQQ IQTAENQLAE TKAEIAVLAM HNNFHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-35	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-35	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G032700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021624537.1	8e-83	LOB domain-containing protein 24-like
Swissprot	P59467	2e-54	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	1e-54	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2C9V954	2e-81	A0A2C9V954_MANES; Uncharacterized protein
STRING	cassava4.1_019527m	3e-82	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-57	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Manes.09G032700.1.p