PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.09G033400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 311aa MW: 35551.7 Da PI: 7.5475

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G033400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.8	4.3e-27	154	208	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W++ LH++Fv++v++LGG+ekAtPk+il++m+ k Lt+ hvkSHLQ+ R+ Manes.09G033400.1.p 154 KKRIKWSQALHKKFVHCVNSLGGAEKATPKAILKMMESKELTIFHVKSHLQQARV 208 68*************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-12	152	208	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-23	153	209	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-19	154	209	IPR006447	Myb domain, plants
Pfam	PF14379	1.6E-12	258	304	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEGESLCQNL EAKLSSSVIA HHLDQLASVF YAADEDFIDF QREDECEIVA MNSSQVPEPG 60 DIVSESSLQT ILMKPYFCSN EHHRFYEKFR RCLSHDEHKK LLGENPNLIG TQVQVPSDEQ 120 NNSNLILSSP RDMEVASFTS SSSCASSVLS LPSKKRIKWS QALHKKFVHC VNSLGGAEKA 180 TPKAILKMME SKELTIFHVK SHLQQARVKS FDQIIFCALQ KYRSEKYMSE YKQDKPLLQG 240 KAESITSDIS ILCMKNNMKI NEALKLQLDV EKHLRQQLEI QRQLQQQIEE NARQLKMMMQ 300 QQQKINKSNL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	154	211	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G033400.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622518.1	0.0	myb family transcription factor PHL5-like isoform X1
TrEMBL	A0A2C9V7P5	0.0	A0A2C9V7P5_MANES; Uncharacterized protein
STRING	cassava4.1_004906m	1e-172	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF26963	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.09G033400.1.p