PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G036500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 356aa    MW: 39178.2 Da    PI: 8.4828
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17183237256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Manes.09G036500.1.p 183 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 237
                          778899***********************************************98 PP
2HD-ZIP_I/II127.84.5e-41183273192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
  Manes.09G036500.1.p 183 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-A 271
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  Manes.09G036500.1.p 272 LK 273
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-568142IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.13E-18176240IPR009057Homeodomain-like
PROSITE profilePS5007116.86179239IPR001356Homeobox domain
SMARTSM003895.4E-15181243IPR001356Homeobox domain
CDDcd000862.05E-15183240No hitNo description
Gene3DG3DSA:1.10.10.605.3E-17183237IPR009057Homeodomain-like
PfamPF000464.6E-15183237IPR001356Homeobox domain
PROSITE patternPS000270214237IPR017970Homeobox, conserved site
PfamPF021837.3E-11239273IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26239282IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELALSLGED TSKPFKFLDQ NPKLSTKDLG FCMGLGTGFT ATPRSHDKVV DSTLQAEAAA  60
AAADIRVSSD HLPVQLDLLP FSPVPRRQPP PQIPFPWLSD NLASERGSTD GSGRGFDVNR  120
LSAEEAEEGA ALSSPNSAMS SFQMDFGIRS SVGGRCNKRD MEAIEAERAS SRASDDEENG  180
LTRKKLRLSK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ  240
TEVDCEYLKR CCETLTEENR RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATSS  300
ATTNDNKKNP VATVAATVTI PLTTTTSNKN STPLSLANKP RLYPFAQAQA HQAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187TRKKLRL
2231239RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.09G036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622568.10.0homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-103HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2C9V9S80.0A0A2C9V9S8_MANES; Uncharacterized protein
STRINGcassava4.1_032881m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-82homeobox from Arabidopsis thaliana